Variant report

Variant	rs4934410
Chromosome Location	chr10:90217659-90217660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10509551	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10887822	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10887831	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11202746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202748	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11202752	0.91[CEU][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11202754	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11202757	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11202761	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11202766	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12356177	0.84[JPT][hapmap]
rs12357364	0.84[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12357948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12359950	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360281	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12413139	0.83[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12413825	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572235	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1325900	1.00[CEU][hapmap]
rs1325906	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1342455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1342458	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1536252	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17112571	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17112575	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1891431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153855	1.00[CEU][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2185785	1.00[CEU][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28794023	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4145084	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4520503	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933482	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934407	0.86[JPT][hapmap]
rs4934414	1.00[CEU][hapmap]
rs61640455	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7076491	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73355485	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73355487	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9664569	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90193800-90227600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:90214800-90217800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:90216200-90218400	Enhancers	Fetal Thymus	thymus
4	chr10:90216200-90218600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:90216400-90220200	Weak transcription	Psoas Muscle	Psoas
6	chr10:90216600-90217800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:90216600-90218400	Enhancers	Thymus	Thymus
8	chr10:90216800-90218000	Weak transcription	Adipose Nuclei	Adipose
9	chr10:90216800-90218200	Enhancers	HSMM	muscle
10	chr10:90216800-90218600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr10:90216800-90227400	Weak transcription	Ovary	ovary
12	chr10:90217000-90218200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:90217000-90218200	Enhancers	HSMMtube	muscle
14	chr10:90217000-90218600	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr10:90217200-90218000	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr10:90217200-90218400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:90217200-90219600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:90217400-90218200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr10:90217600-90217800	Enhancers	Right Atrium	heart
20	chr10:90217600-90218000	Enhancers	Gastric	stomach
21	chr10:90217600-90218000	Enhancers	Pancreas	Pancrea
22	chr10:90217600-90218200	Enhancers	Placenta	Placenta
23	chr10:90217600-90218200	Enhancers	Lung	lung
24	chr10:90217600-90218400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:90217600-90218600	Enhancers	Monocytes-CD14+_RO01746	blood

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