Variant report

Variant	rs1537276
Chromosome Location	chr9:21506356-21506357
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10491566	0.83[CEU][hapmap]
rs10757222	0.80[CEU][hapmap]
rs1412395	0.80[CEU][hapmap];0.81[GIH][hapmap]
rs2026983	0.80[CEU][hapmap]
rs2210437	0.91[CEU][hapmap]
rs6475537	1.00[ASN][1000 genomes]
rs725074	0.83[EUR][1000 genomes]
rs7866844	0.81[GIH][hapmap]
rs7868724	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	nsv466297	chr9:21391698-21507589	Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv613758	chr9:21391698-21507589	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1030064	chr9:21455760-21524674	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	111 gene(s)	inside rSNPs	diseases
5	nsv1020445	chr9:21464962-21524162	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	109 gene(s)	inside rSNPs	diseases
6	nsv1020232	chr9:21464962-21524999	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	110 gene(s)	inside rSNPs	diseases
7	nsv892740	chr9:21471499-21551513	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA	110 gene(s)	inside rSNPs	diseases
8	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
9	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
10	esv2757326	chr9:21499624-21526526	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA	105 gene(s)	inside rSNPs	diseases
11	esv2759680	chr9:21499624-21526526	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA	105 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1537276	RPS6	cis	cerebellum	SCAN

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21466000-21527600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:21494800-21527600	Weak transcription	Gastric	stomach
3	chr9:21503000-21506600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:21503600-21507000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr9:21503600-21507000	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr9:21503600-21508000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:21503600-21509400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:21503800-21506800	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr9:21503800-21509000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:21504200-21506800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:21504200-21507800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:21504200-21507800	Weak transcription	Placenta	Placenta
13	chr9:21504600-21506800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr9:21504600-21507200	Enhancers	Osteobl	bone
15	chr9:21504800-21507000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr9:21504800-21508200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr9:21504800-21508600	Enhancers	Fetal Intestine Large	intestine
18	chr9:21504800-21509400	Enhancers	NH-A	brain
19	chr9:21504800-21509400	Enhancers	NHDF-Ad	bronchial
20	chr9:21504800-21509800	Enhancers	NHEK	skin
21	chr9:21504800-21510200	Enhancers	HMEC	breast
22	chr9:21505000-21506800	Enhancers	Fetal Intestine Small	intestine
23	chr9:21505000-21507000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr9:21505000-21507200	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr9:21505000-21507600	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr9:21505000-21508200	Enhancers	NHLF	lung
27	chr9:21505000-21510200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:21505200-21507200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr9:21505200-21508000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:21505200-21510200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr9:21505400-21507200	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr9:21505400-21508000	Enhancers	HSMM	muscle
33	chr9:21505600-21506400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr9:21505600-21506600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr9:21505600-21507000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr9:21505600-21507200	Enhancers	Small Intestine	intestine
37	chr9:21505600-21508400	Enhancers	A549	lung
38	chr9:21505600-21509400	Enhancers	HUVEC	blood vessel
39	chr9:21505800-21506400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr9:21505800-21506400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr9:21505800-21506800	Weak transcription	Stomach Mucosa	stomach
42	chr9:21505800-21507000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr9:21505800-21507200	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr9:21505800-21509400	Enhancers	Muscle Satellite Cultured Cells	--
45	chr9:21506000-21506400	Enhancers	Primary hematopoietic stem cells	blood
46	chr9:21506000-21506600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr9:21506000-21506800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr9:21506200-21506400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr9:21506200-21508200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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