Variant report

Variant	rs1538526
Chromosome Location	chr1:216991702-216991703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1030846	0.80[CEU][hapmap]
rs1126022	0.85[ASN][1000 genomes]
rs1339337	0.80[CEU][hapmap]
rs1339338	0.81[CEU][hapmap];0.90[JPT][hapmap]
rs1339348	0.81[CEU][hapmap]
rs1339356	0.80[CEU][hapmap]
rs1344873	0.87[ASN][1000 genomes]
rs1832532	0.81[ASN][1000 genomes]
rs2032028	0.80[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs2118151	0.87[ASN][1000 genomes]
rs2576231	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576234	0.80[CEU][hapmap]
rs2576235	0.84[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2576236	0.81[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2576238	0.89[JPT][hapmap]
rs2789716	0.80[CEU][hapmap]
rs2789720	0.90[JPT][hapmap]
rs2813661	0.84[CEU][hapmap]
rs6604647	0.80[CEU][hapmap]
rs7554036	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216987600-216992400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:216988000-216997200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:216989000-217005800	Weak transcription	Left Ventricle	heart
4	chr1:216989200-216992600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:216989400-216998200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:216989600-216991800	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:216989600-216992400	Enhancers	Fetal Heart	heart
8	chr1:216989600-216992600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:216989600-216992800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:216989600-216993200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:216989600-216993200	Weak transcription	Small Intestine	intestine
12	chr1:216989600-216993200	Weak transcription	HSMMtube	muscle
13	chr1:216989600-216993600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:216989600-216993800	Weak transcription	Fetal Intestine Small	intestine
15	chr1:216989600-216993800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr1:216989600-216994000	Weak transcription	Fetal Intestine Large	intestine
17	chr1:216989600-216997800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr1:216989600-216998000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr1:216989600-217000600	Weak transcription	Psoas Muscle	Psoas
20	chr1:216989800-216992800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr1:216989800-216993800	Weak transcription	Fetal Kidney	kidney
22	chr1:216990000-216992600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr1:216990000-216994000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr1:216990000-216998000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr1:216991000-216992400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr1:216991600-216991800	Enhancers	Fetal Brain Male	brain

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