Variant report

Variant	rs2576231
Chromosome Location	chr1:216994377-216994378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1126022	0.85[ASN][1000 genomes]
rs1339338	0.90[JPT][hapmap]
rs1339356	0.80[CEU][hapmap]
rs1344873	0.87[ASN][1000 genomes]
rs1538526	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1832532	0.81[ASN][1000 genomes]
rs2032028	0.80[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs2118151	0.87[ASN][1000 genomes]
rs2576234	0.80[CEU][hapmap]
rs2576235	0.84[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2576236	0.82[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2576238	0.89[JPT][hapmap]
rs2789720	0.90[JPT][hapmap]
rs6604647	0.80[CEU][hapmap]
rs7554036	0.81[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216988000-216997200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:216989000-217005800	Weak transcription	Left Ventricle	heart
3	chr1:216989400-216998200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:216989600-216997800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr1:216989600-216998000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:216989600-217000600	Weak transcription	Psoas Muscle	Psoas
7	chr1:216990000-216998000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:216992200-216994400	Weak transcription	Fetal Muscle Leg	muscle
9	chr1:216992400-216994600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr1:216992400-216996800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:216993000-216994800	Enhancers	Fetal Heart	heart
12	chr1:216993200-216994400	Enhancers	HSMMtube	muscle
13	chr1:216993200-216995200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:216993200-216995800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr1:216993800-216994400	Enhancers	Small Intestine	intestine
16	chr1:216993800-216994600	Enhancers	Fetal Intestine Small	intestine
17	chr1:216993800-216994600	Enhancers	Fetal Kidney	kidney
18	chr1:216993800-216994600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr1:216994000-216994400	Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr1:216994000-216994600	Enhancers	Fetal Intestine Large	intestine
21	chr1:216994200-216995400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr1:216994200-216995600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr1:216994200-216996000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr1:216994200-216998000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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