Variant report

Variant	rs1126022
Chromosome Location	chr1:217004590-217004591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1030846	0.80[AMR][1000 genomes]
rs1339338	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1339356	0.80[AMR][1000 genomes]
rs1344873	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1538526	0.85[ASN][1000 genomes]
rs1832532	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2032028	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2118151	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2576231	0.85[ASN][1000 genomes]
rs2576235	0.91[ASN][1000 genomes]
rs2576236	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2576238	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2789720	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2813671	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4575149	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6604647	0.91[AMR][1000 genomes]
rs7512365	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7554036	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216989000-217005800	Weak transcription	Left Ventricle	heart
2	chr1:217003200-217007200	Enhancers	Fetal Heart	heart
3	chr1:217003600-217004600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:217003600-217005600	Enhancers	Fetal Intestine Large	intestine
5	chr1:217003800-217004600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:217003800-217004800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr1:217003800-217005600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:217004000-217004800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr1:217004000-217005600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:217004200-217004800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:217004400-217004800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr1:217004400-217005600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr1:217004400-217005600	Weak transcription	Fetal Stomach	stomach
14	chr1:217004400-217005800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr1:217004400-217006800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr1:217004400-217014600	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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