Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1030846	0.83[AMR][1000 genomes]
rs1126022	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1339338	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1339356	0.83[AMR][1000 genomes]
rs1436888	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1538526	0.87[ASN][1000 genomes]
rs1832532	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2032028	0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2118151	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576231	0.87[ASN][1000 genomes]
rs2576235	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2576236	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2576238	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2789716	0.82[AMR][1000 genomes]
rs2789720	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2813671	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4575149	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6604647	0.94[AMR][1000 genomes]
rs7512365	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7554036	0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216989000-217005800	Weak transcription	Left Ventricle	heart
2	chr1:216994600-217004000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:216996400-217004400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:216998600-217004000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:217003200-217007200	Enhancers	Fetal Heart	heart
6	chr1:217003400-217004400	Enhancers	Fetal Stomach	stomach
7	chr1:217003600-217004400	Enhancers	Fetal Intestine Small	intestine
8	chr1:217003600-217004600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:217003600-217005600	Enhancers	Fetal Intestine Large	intestine
10	chr1:217003800-217004400	Enhancers	Fetal Muscle Leg	muscle
11	chr1:217003800-217004400	Enhancers	Stomach Smooth Muscle	stomach
12	chr1:217003800-217004600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:217003800-217004800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr1:217003800-217005600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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