The 2.0 version of rSNPBase

Variant report

Variant rs154140
Chromosome Location chr5:50068245-50068246
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:50040000-50069200 Weak transcription H1 Cell Line embryonic stem cell
2 chr5:50041400-50068800 Weak transcription Primary hematopoietic stem cells blood
3 chr5:50041800-50069200 Weak transcription Adipose Nuclei Adipose
4 chr5:50041800-50070200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr5:50041800-50090000 Weak transcription Small Intestine intestine
6 chr5:50046600-50068600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
7 chr5:50047400-50069000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
8 chr5:50047800-50069400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr5:50051200-50084600 Weak transcription NHEK skin
10 chr5:50051600-50068800 Weak transcription Fetal Lung lung
11 chr5:50052000-50078000 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr5:50052600-50069200 Strong transcription Monocytes-CD14+_RO01746 blood
13 chr5:50052800-50098800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
14 chr5:50054400-50069400 Weak transcription Duodenum Mucosa Duodenum
15 chr5:50056600-50070000 Strong transcription Primary monocytes fromperipheralblood blood
16 chr5:50056800-50126400 Weak transcription Rectal Smooth Muscle rectum
17 chr5:50057800-50084600 Weak transcription Ovary ovary
18 chr5:50057800-50090600 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr5:50058000-50070000 Weak transcription Lung lung
20 chr5:50058000-50090600 Weak transcription Aorta Aorta
21 chr5:50058200-50070800 Weak transcription Spleen Spleen
22 chr5:50058200-50075200 Weak transcription Gastric stomach
23 chr5:50058200-50084600 Weak transcription Fetal Thymus thymus
24 chr5:50058200-50092400 Weak transcription Colon Smooth Muscle Colon
25 chr5:50058400-50068800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr5:50058400-50069200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
27 chr5:50060000-50069000 Weak transcription Rectal Mucosa Donor 31 rectum
28 chr5:50060200-50069200 Weak transcription Left Ventricle heart
29 chr5:50060200-50084600 Weak transcription Thymus Thymus
30 chr5:50060400-50069000 Weak transcription Breast Myoepithelial Primary Cells Breast
31 chr5:50060400-50069200 Weak transcription Stomach Smooth Muscle stomach
32 chr5:50060400-50073400 Weak transcription Primary T killer memory cells from peripheral blood blood
33 chr5:50060400-50081800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr5:50060600-50069200 Weak transcription Liver Liver
35 chr5:50062200-50070000 Weak transcription Pancreas Pancrea
36 chr5:50063200-50069000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
37 chr5:50063200-50082800 Weak transcription Fetal Heart heart
38 chr5:50063800-50069000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr5:50063800-50069200 Weak transcription HMEC breast
40 chr5:50063800-50070400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
41 chr5:50064000-50069600 Strong transcription Primary T helper cells fromperipheralblood blood
42 chr5:50064000-50084400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr5:50064000-50126800 Weak transcription Osteobl bone
44 chr5:50064800-50069000 Weak transcription Primary T helper naive cells from peripheral blood blood
45 chr5:50065400-50068800 Weak transcription GM12878-XiMat blood
46 chr5:50066000-50068600 Strong transcription Primary T cells fromperipheralblood blood
47 chr5:50066200-50069400 Strong transcription Primary T helper memory cells from peripheral blood 1 blood
48 chr5:50066800-50084200 Weak transcription Primary T killer naive cells fromperipheralblood blood
49 chr5:50067200-50069600 Strong transcription Primary T regulatory cells fromperipheralblood blood
50 chr5:50067200-50070200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell

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Last update: Aug 31, 2015