The 2.0 version of rSNPBase

Variant report

Variant rs13361410
Chromosome Location chr5:50098224-50098225
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:50052800-50098800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
2 chr5:50056800-50126400 Weak transcription Rectal Smooth Muscle rectum
3 chr5:50064000-50126800 Weak transcription Osteobl bone
4 chr5:50069600-50100000 Weak transcription Primary hematopoietic stem cells blood
5 chr5:50071400-50099000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr5:50071400-50108000 Strong transcription Monocytes-CD14+_RO01746 blood
7 chr5:50071600-50138200 Weak transcription Placenta Placenta
8 chr5:50078200-50140000 Weak transcription Placenta Amnion Placenta Amnion
9 chr5:50081600-50098600 Strong transcription Primary T cells fromperipheralblood blood
10 chr5:50081600-50098800 Strong transcription Primary T helper cells PMA-I stimulated --
11 chr5:50083200-50098800 Weak transcription Brain Hippocampus Middle brain
12 chr5:50083200-50116800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
13 chr5:50085000-50099800 Weak transcription iPS-18 Cell Line embryonic stem cell
14 chr5:50085400-50123800 Weak transcription Rectal Mucosa Donor 29 rectum
15 chr5:50085400-50136200 Weak transcription Thymus Thymus
16 chr5:50085800-50098800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr5:50087400-50098800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr5:50088200-50098800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
19 chr5:50090600-50100600 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
20 chr5:50091200-50098800 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr5:50091200-50099800 Weak transcription Aorta Aorta
22 chr5:50091200-50103600 Weak transcription HUES6 Cell Line embryonic stem cell
23 chr5:50091200-50104000 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr5:50091200-50113800 Weak transcription Fetal Stomach stomach
25 chr5:50091200-50116200 Weak transcription Stomach Smooth Muscle stomach
26 chr5:50091200-50118800 Weak transcription Spleen Spleen
27 chr5:50091200-50123800 Weak transcription Fetal Thymus thymus
28 chr5:50091200-50124800 Weak transcription Esophagus oesophagus
29 chr5:50091200-50130400 Weak transcription Pancreas Pancrea
30 chr5:50091200-50133600 Weak transcription Lung lung
31 chr5:50091200-50136000 Weak transcription Gastric stomach
32 chr5:50091200-50140600 Weak transcription Small Intestine intestine
33 chr5:50091400-50101600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
34 chr5:50091400-50124000 Weak transcription H1 Cell Line embryonic stem cell
35 chr5:50091800-50104000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr5:50091800-50123400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr5:50093200-50112200 Weak transcription HUES64 Cell Line embryonic stem cell
38 chr5:50094000-50111200 Weak transcription iPS-20b Cell Line embryonic stem cell
39 chr5:50094000-50123800 Weak transcription HMEC breast
40 chr5:50094200-50098800 Weak transcription Duodenum Mucosa Duodenum
41 chr5:50094200-50111600 Weak transcription HUES48 Cell Line embryonic stem cell
42 chr5:50095200-50100200 Strong transcription Primary T helper 17 cells PMA-I stimulated --
43 chr5:50095400-50098800 Strong transcription Primary T helper naive cells from peripheral blood blood
44 chr5:50095600-50098800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
45 chr5:50095600-50103200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr5:50095800-50098800 Weak transcription Adipose Nuclei Adipose
47 chr5:50095800-50114800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr5:50095800-50123400 Weak transcription Fetal Lung lung
49 chr5:50096000-50132200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
50 chr5:50096400-50098800 Weak transcription Primary neutrophils fromperipheralblood blood

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Last update: Aug 31, 2015