Variant report

Variant	rs73097023
Chromosome Location	chr5:49960388-49960389
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:49959134..49960803-chr5:50062172..50064095,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10035164	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10036060	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10039272	0.95[ASN][1000 genomes]
rs10044566	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10051561	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10054381	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10056836	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10058388	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10059085	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10060850	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10065432	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10072398	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10075034	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10085036	0.87[ASN][1000 genomes]
rs10940472	0.84[ASN][1000 genomes]
rs10940497	0.84[ASN][1000 genomes]
rs11750241	0.84[ASN][1000 genomes]
rs11750771	0.84[ASN][1000 genomes]
rs12188262	0.84[ASN][1000 genomes]
rs12188654	0.88[ASN][1000 genomes]
rs12654776	0.81[ASN][1000 genomes]
rs13153982	0.84[ASN][1000 genomes]
rs13173734	0.84[ASN][1000 genomes]
rs13361410	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13436520	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16884018	0.88[ASN][1000 genomes]
rs182230	0.84[ASN][1000 genomes]
rs2354525	0.91[ASN][1000 genomes]
rs2594706	0.84[ASN][1000 genomes]
rs282553	0.84[ASN][1000 genomes]
rs282557	0.84[ASN][1000 genomes]
rs282561	0.84[ASN][1000 genomes]
rs28495689	0.82[ASN][1000 genomes]
rs28505342	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28711235	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs32404	0.87[ASN][1000 genomes]
rs3763367	0.88[ASN][1000 genomes]
rs4865628	0.84[ASN][1000 genomes]
rs57079776	0.88[ASN][1000 genomes]
rs62366937	0.84[ASN][1000 genomes]
rs6872496	0.84[ASN][1000 genomes]
rs6890519	0.84[ASN][1000 genomes]
rs73101028	0.84[ASN][1000 genomes]
rs73101075	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016583	chr5:49455624-50116720	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1023140	chr5:49455624-50121623	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv918220	chr5:49584188-50111282	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv931010	chr5:49584189-50118254	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv523212	chr5:49597497-50058043	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv2757995	chr5:49748352-50058182	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv2759342	chr5:49748352-50058182	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv16870	chr5:49885849-49989415	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv818352	chr5:49958221-50017724	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:49949800-49961600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:49953000-49961800	Weak transcription	Esophagus	oesophagus
3	chr5:49954400-49961000	Weak transcription	Primary B cells from cord blood	blood
4	chr5:49958800-49961800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr5:49959200-49961000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:49959200-49961600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr5:49959200-49961800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr5:49959400-49961400	Enhancers	Primary T cells from cord blood	blood
9	chr5:49959400-49961400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr5:49959400-49961600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr5:49959600-49960400	Enhancers	Fetal Lung	lung
12	chr5:49959600-49960400	Weak transcription	Stomach Mucosa	stomach
13	chr5:49959600-49961000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr5:49959600-49961000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr5:49959600-49961400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:49959600-49961600	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr5:49959600-49961600	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr5:49959600-49961600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr5:49959600-49961800	Weak transcription	Small Intestine	intestine
20	chr5:49959600-49962200	Weak transcription	Left Ventricle	heart
21	chr5:49959800-49960800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr5:49959800-49960800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr5:49959800-49961000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr5:49959800-49961000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr5:49959800-49961000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr5:49959800-49961200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr5:49959800-49961200	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr5:49959800-49962200	Weak transcription	Lung	lung
29	chr5:49959800-49962200	Weak transcription	Spleen	Spleen
30	chr5:49960000-49961600	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr5:49960000-49961800	Weak transcription	Adipose Nuclei	Adipose
32	chr5:49960000-49961800	Weak transcription	Placenta	Placenta

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