The 2.0 version of rSNPBase

Variant report

Variant rs10072398
Chromosome Location chr5:49983873-49983874
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:49968800-49990400 Weak transcription Small Intestine intestine
2 chr5:49976200-49985400 Weak transcription Primary monocytes fromperipheralblood blood
3 chr5:49976800-50000000 Weak transcription Fetal Stomach stomach
4 chr5:49977800-49990600 Weak transcription Pancreas Pancrea
5 chr5:49978200-49985200 Weak transcription Primary T cells from cord blood blood
6 chr5:49978200-49995000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
7 chr5:49979000-49995200 Weak transcription H9 Cell Line embryonic stem cell
8 chr5:49979200-49985600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
9 chr5:49979400-50006600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr5:49980800-49995000 Weak transcription Thymus Thymus
11 chr5:49981400-49992600 Weak transcription Primary B cells from peripheral blood blood
12 chr5:49982000-49984000 Enhancers Primary Natural Killer cells fromperipheralblood blood
13 chr5:49982200-49986800 Weak transcription Dnd41 blood
14 chr5:49982400-49985200 Weak transcription Primary T regulatory cells fromperipheralblood blood
15 chr5:49982600-49987800 Strong transcription Primary B cells from cord blood blood
16 chr5:49982600-49992000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
17 chr5:49982800-49985400 Weak transcription Aorta Aorta
18 chr5:49982800-49987200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
19 chr5:49982800-49997000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
20 chr5:49983000-49988000 Weak transcription Fetal Thymus thymus
21 chr5:49983000-49998800 Weak transcription Lung lung
22 chr5:49983200-49984000 ZNF genes & repeats hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr5:49983200-49994200 Enhancers Primary T helper naive cells from peripheral blood blood
24 chr5:49983400-49984000 Genic enhancers Primary T cells fromperipheralblood blood
25 chr5:49983400-49984200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
26 chr5:49983400-49984200 Enhancers Primary T killer naive cells fromperipheralblood blood
27 chr5:49983400-49985400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
28 chr5:49983400-49987000 Weak transcription HUES48 Cell Line embryonic stem cell
29 chr5:49983400-50006800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
30 chr5:49983600-49984000 ZNF genes & repeats H1 Cell Line embryonic stem cell
31 chr5:49983600-49984000 Enhancers iPS-18 Cell Line embryonic stem cell
32 chr5:49983600-49984000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr5:49983600-49984000 Enhancers Primary neutrophils fromperipheralblood blood
34 chr5:49983600-49984200 Genic enhancers Primary T helper cells PMA-I stimulated --
35 chr5:49983600-49984200 Genic enhancers Monocytes-CD14+_RO01746 blood
36 chr5:49983600-49984400 Enhancers Primary T helper naive cells fromperipheralblood blood
37 chr5:49983600-49984400 Enhancers Primary T killer memory cells from peripheral blood blood
38 chr5:49983600-49985800 Enhancers Primary T helper cells fromperipheralblood blood
39 chr5:49983800-49984000 Strong transcription Primary hematopoietic stem cells short term culture blood
40 chr5:49983800-49984200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr5:49983800-49985200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr5:49983800-49986800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015