Variant report

Variant	rs1545517
Chromosome Location	chr8:107473044-107473045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1453219	0.81[EUR][1000 genomes]
rs1453220	0.81[EUR][1000 genomes]
rs1453222	0.81[EUR][1000 genomes]
rs1453223	0.81[EUR][1000 genomes]
rs1453225	0.81[EUR][1000 genomes]
rs1551268	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1580059	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1619201	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1627330	0.81[AMR][1000 genomes]
rs1670392	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1670394	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1670395	0.81[EUR][1000 genomes]
rs1670401	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17338307	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1869307	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2123540	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2123541	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2167797	0.81[EUR][1000 genomes]
rs2345800	0.81[EUR][1000 genomes]
rs2444319	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2444321	0.81[EUR][1000 genomes]
rs2444322	0.81[EUR][1000 genomes]
rs2510810	0.92[EUR][1000 genomes]
rs2510812	0.91[EUR][1000 genomes]
rs2510814	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2510815	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2510816	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2510828	0.81[EUR][1000 genomes]
rs2510829	0.81[EUR][1000 genomes]
rs2510833	0.98[EUR][1000 genomes]
rs3018081	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4734911	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs965159	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs972598	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs984679	0.81[EUR][1000 genomes]
rs987645	0.81[EUR][1000 genomes]
rs987646	0.81[EUR][1000 genomes]
rs987647	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611844	chr8:107440038-107494918	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107466000-107487000	Weak transcription	Aorta	Aorta
2	chr8:107467400-107473800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:107468600-107477800	Weak transcription	NHDF-Ad	bronchial
4	chr8:107469200-107473800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:107469600-107473400	Weak transcription	HUVEC	blood vessel
6	chr8:107472400-107473200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:107472400-107473800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:107472400-107474200	Weak transcription	HMEC	breast
9	chr8:107472800-107473800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:107473000-107473400	Weak transcription	NHEK	skin

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