Variant report

Variant	rs2510812
Chromosome Location	chr8:107525836-107525837
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1349739	0.83[AFR][1000 genomes]
rs1381839	0.83[AFR][1000 genomes]
rs1453208	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1453228	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1545517	0.91[EUR][1000 genomes]
rs1551268	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1580059	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1612878	0.83[AFR][1000 genomes]
rs1619201	0.91[EUR][1000 genomes]
rs1620490	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1670394	0.91[EUR][1000 genomes]
rs1670399	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1670400	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1670401	0.91[EUR][1000 genomes]
rs17338307	0.86[EUR][1000 genomes]
rs1789968	0.80[AFR][1000 genomes]
rs1789969	0.83[AFR][1000 genomes]
rs1869307	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2123540	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2123541	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2444319	0.92[EUR][1000 genomes]
rs2510810	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2510814	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2510815	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2510816	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2510833	0.92[EUR][1000 genomes]
rs3018081	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134128	0.82[YRI][hapmap]
rs4734911	0.85[EUR][1000 genomes]
rs965159	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs972598	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107513600-107526200	Weak transcription	Brain Angular Gyrus	brain
3	chr8:107516800-107536200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:107522200-107526800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:107524000-107534600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:107524200-107531200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:107525600-107526000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr8:107525600-107527000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr8:107525800-107526600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr8:107525800-107526800	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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