Variant report

Variant	rs1619201
Chromosome Location	chr8:107462775-107462776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1453219	0.81[EUR][1000 genomes]
rs1453220	0.81[EUR][1000 genomes]
rs1453222	0.81[EUR][1000 genomes]
rs1453223	0.81[EUR][1000 genomes]
rs1453225	0.81[EUR][1000 genomes]
rs1545517	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1551268	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1580059	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1627330	0.84[AMR][1000 genomes]
rs1670392	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1670394	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1670395	0.81[EUR][1000 genomes]
rs1670401	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17338307	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1789979	0.81[AMR][1000 genomes]
rs1869307	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2123540	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2123541	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2167797	0.81[EUR][1000 genomes]
rs2345800	0.81[EUR][1000 genomes]
rs2444319	0.98[EUR][1000 genomes]
rs2444321	0.81[EUR][1000 genomes]
rs2444322	0.81[EUR][1000 genomes]
rs2510810	0.92[EUR][1000 genomes]
rs2510812	0.91[EUR][1000 genomes]
rs2510814	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2510815	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2510816	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2510828	0.81[EUR][1000 genomes]
rs2510829	0.81[EUR][1000 genomes]
rs2510833	0.98[EUR][1000 genomes]
rs3018081	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4734911	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs965159	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs972598	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs984679	0.81[EUR][1000 genomes]
rs987645	0.81[EUR][1000 genomes]
rs987646	0.81[EUR][1000 genomes]
rs987647	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611844	chr8:107440038-107494918	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107452000-107465200	Weak transcription	Aorta	Aorta
2	chr8:107457000-107470400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:107460600-107465400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr8:107460600-107467000	Weak transcription	Gastric	stomach
5	chr8:107461400-107467000	Weak transcription	Stomach Mucosa	stomach
6	chr8:107462000-107463000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:107462000-107463000	Enhancers	Osteobl	bone
8	chr8:107462000-107463400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:107462000-107463400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr8:107462200-107463000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:107462200-107467000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr8:107462400-107462800	Enhancers	Brain Cingulate Gyrus	brain
13	chr8:107462400-107462800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr8:107462600-107463000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:107462600-107463000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:107462600-107463200	Active TSS	Stomach Smooth Muscle	stomach
17	chr8:107462600-107465200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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