Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107426897..107429687-chr8:107442914..107445145,2	K562	blood:
2	chr8:107428187..107430398-chr8:107443082..107445145,2	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11781206	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1545517	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1551268	0.92[EUR][1000 genomes]
rs1580059	0.94[EUR][1000 genomes]
rs1619201	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1627330	0.81[EUR][1000 genomes]
rs1670394	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1670401	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1789979	0.83[EUR][1000 genomes]
rs1869307	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2123540	0.94[EUR][1000 genomes]
rs2123541	0.92[EUR][1000 genomes]
rs2444319	0.94[EUR][1000 genomes]
rs2510810	0.88[EUR][1000 genomes]
rs2510812	0.86[EUR][1000 genomes]
rs2510814	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2510815	0.91[EUR][1000 genomes]
rs2510816	0.91[EUR][1000 genomes]
rs2510833	0.94[EUR][1000 genomes]
rs3018081	0.94[EUR][1000 genomes]
rs4734911	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4734915	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61466727	0.83[EUR][1000 genomes]
rs6990573	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs965159	0.92[EUR][1000 genomes]
rs972598	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107404400-107447000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107411600-107439200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:107414600-107446400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:107427200-107431400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr8:107427400-107428600	Enhancers	Colon Smooth Muscle	Colon
6	chr8:107427400-107435200	Weak transcription	Aorta	Aorta
7	chr8:107428000-107430000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search: