Variant report

Variant	rs61466727
Chromosome Location	chr8:107425575-107425576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1026294	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11781206	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990584	0.96[ASN][1000 genomes]
rs11990626	0.96[ASN][1000 genomes]
rs11991428	0.96[ASN][1000 genomes]
rs1377403	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1377404	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1377406	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1453219	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1453220	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1453222	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1453223	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1453225	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1551266	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1551267	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1627330	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1670392	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1670395	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16874557	1.00[ASN][1000 genomes]
rs17338307	0.83[EUR][1000 genomes]
rs1789979	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1869308	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1901780	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1901782	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2167797	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2345800	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2345801	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2345802	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2444315	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2444317	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2444318	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2444321	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2444322	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2510821	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2510822	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2510823	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2510824	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2510825	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2510828	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2510829	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2510830	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4734911	0.81[EUR][1000 genomes]
rs4734915	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990573	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73309264	0.96[ASN][1000 genomes]
rs73309267	0.96[ASN][1000 genomes]
rs7827001	0.96[ASN][1000 genomes]
rs7838299	0.96[ASN][1000 genomes]
rs965157	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs984679	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs987645	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs987646	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs987647	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107362400-107427000	Weak transcription	Aorta	Aorta
2	chr8:107404400-107447000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:107411200-107426400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:107411400-107427000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:107411600-107439200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:107414600-107446400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:107423800-107426400	Weak transcription	Gastric	stomach
8	chr8:107424800-107426800	Weak transcription	Stomach Mucosa	stomach

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