Variant report

Variant	rs16874557
Chromosome Location	chr8:107428478-107428479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107426897..107429687-chr8:107442914..107445145,2	K562	blood:
2	chr8:107428187..107430398-chr8:107443082..107445145,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1026294	0.88[ASN][1000 genomes]
rs11781206	1.00[ASN][1000 genomes]
rs11990584	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11990626	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11991428	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1377403	0.88[ASN][1000 genomes]
rs1377404	0.88[ASN][1000 genomes]
rs1377406	0.88[ASN][1000 genomes]
rs1453219	0.84[ASN][1000 genomes]
rs1453220	0.84[ASN][1000 genomes]
rs1453222	0.84[ASN][1000 genomes]
rs1453223	0.84[ASN][1000 genomes]
rs1453225	0.84[ASN][1000 genomes]
rs1551266	0.88[ASN][1000 genomes]
rs1551267	0.88[ASN][1000 genomes]
rs1627330	1.00[ASN][1000 genomes]
rs1670392	1.00[ASN][1000 genomes]
rs1670395	0.84[ASN][1000 genomes]
rs1789979	1.00[ASN][1000 genomes]
rs1869308	0.88[ASN][1000 genomes]
rs1901780	0.88[ASN][1000 genomes]
rs1901782	0.88[ASN][1000 genomes]
rs2167797	0.88[ASN][1000 genomes]
rs2345800	0.88[ASN][1000 genomes]
rs2345801	0.88[ASN][1000 genomes]
rs2345802	0.88[ASN][1000 genomes]
rs2444315	0.88[ASN][1000 genomes]
rs2444317	0.88[ASN][1000 genomes]
rs2444318	0.88[ASN][1000 genomes]
rs2444321	0.84[ASN][1000 genomes]
rs2444322	0.84[ASN][1000 genomes]
rs2510821	0.88[ASN][1000 genomes]
rs2510822	0.88[ASN][1000 genomes]
rs2510823	0.88[ASN][1000 genomes]
rs2510824	0.88[ASN][1000 genomes]
rs2510825	0.88[ASN][1000 genomes]
rs2510828	0.84[ASN][1000 genomes]
rs2510829	0.84[ASN][1000 genomes]
rs2510830	0.86[ASN][1000 genomes]
rs4734915	1.00[ASN][1000 genomes]
rs57356491	0.85[EUR][1000 genomes]
rs61466727	1.00[ASN][1000 genomes]
rs6990573	0.98[ASN][1000 genomes]
rs73309264	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73309267	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73699586	0.85[EUR][1000 genomes]
rs73699587	0.85[EUR][1000 genomes]
rs73699588	0.85[EUR][1000 genomes]
rs73699593	0.85[EUR][1000 genomes]
rs73699594	0.85[EUR][1000 genomes]
rs73699596	0.85[EUR][1000 genomes]
rs7826722	0.85[EUR][1000 genomes]
rs7827001	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7830033	0.85[EUR][1000 genomes]
rs7838299	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs965157	0.88[ASN][1000 genomes]
rs984679	0.84[ASN][1000 genomes]
rs987645	0.84[ASN][1000 genomes]
rs987646	0.84[ASN][1000 genomes]
rs987647	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107404400-107447000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107411600-107439200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:107414600-107446400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:107427200-107431400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr8:107427400-107428600	Enhancers	Colon Smooth Muscle	Colon
6	chr8:107427400-107435200	Weak transcription	Aorta	Aorta
7	chr8:107428000-107430000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:107428400-107428600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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