Variant report

Variant	rs73309267
Chromosome Location	chr8:107477703-107477704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107195796..107197608-chr8:107475772..107478613,2	K562	blood:
2	chr8:107473925..107475852-chr8:107477064..107479538,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1026294	0.91[ASN][1000 genomes]
rs11781206	0.96[ASN][1000 genomes]
rs11990584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11991428	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1377403	0.91[ASN][1000 genomes]
rs1377404	0.91[ASN][1000 genomes]
rs1377406	0.91[ASN][1000 genomes]
rs1453219	0.88[ASN][1000 genomes]
rs1453220	0.88[ASN][1000 genomes]
rs1453222	0.88[ASN][1000 genomes]
rs1453223	0.88[ASN][1000 genomes]
rs1453225	0.88[ASN][1000 genomes]
rs1551266	0.91[ASN][1000 genomes]
rs1551267	0.91[ASN][1000 genomes]
rs1627330	0.96[ASN][1000 genomes]
rs1670392	0.96[ASN][1000 genomes]
rs1670395	0.88[ASN][1000 genomes]
rs16874557	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1789979	0.96[ASN][1000 genomes]
rs1869308	0.91[ASN][1000 genomes]
rs1901780	0.91[ASN][1000 genomes]
rs1901782	0.91[ASN][1000 genomes]
rs2167797	0.91[ASN][1000 genomes]
rs2345800	0.91[ASN][1000 genomes]
rs2345801	0.91[ASN][1000 genomes]
rs2345802	0.91[ASN][1000 genomes]
rs2444315	0.91[ASN][1000 genomes]
rs2444317	0.91[ASN][1000 genomes]
rs2444318	0.91[ASN][1000 genomes]
rs2444321	0.88[ASN][1000 genomes]
rs2444322	0.88[ASN][1000 genomes]
rs2510821	0.91[ASN][1000 genomes]
rs2510822	0.91[ASN][1000 genomes]
rs2510823	0.91[ASN][1000 genomes]
rs2510824	0.91[ASN][1000 genomes]
rs2510825	0.91[ASN][1000 genomes]
rs2510828	0.88[ASN][1000 genomes]
rs2510829	0.88[ASN][1000 genomes]
rs2510830	0.86[ASN][1000 genomes]
rs4734915	0.96[ASN][1000 genomes]
rs57356491	0.92[EUR][1000 genomes]
rs61466727	0.96[ASN][1000 genomes]
rs6990573	0.95[ASN][1000 genomes]
rs73309264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73699586	0.92[EUR][1000 genomes]
rs73699587	0.92[EUR][1000 genomes]
rs73699588	0.92[EUR][1000 genomes]
rs73699593	0.92[EUR][1000 genomes]
rs73699594	0.92[EUR][1000 genomes]
rs73699596	0.92[EUR][1000 genomes]
rs7826722	0.92[EUR][1000 genomes]
rs7827001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830033	0.92[EUR][1000 genomes]
rs7838299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965157	0.91[ASN][1000 genomes]
rs984679	0.88[ASN][1000 genomes]
rs987645	0.88[ASN][1000 genomes]
rs987646	0.88[ASN][1000 genomes]
rs987647	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611844	chr8:107440038-107494918	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107466000-107487000	Weak transcription	Aorta	Aorta
2	chr8:107468600-107477800	Weak transcription	NHDF-Ad	bronchial
3	chr8:107474600-107480600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:107475400-107511600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:107477400-107478200	Enhancers	Cortex derived primary cultured neurospheres	brain

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