Variant report

Variant	rs73699587
Chromosome Location	chr8:107570591-107570592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11990584	0.92[EUR][1000 genomes]
rs11990626	0.92[EUR][1000 genomes]
rs11991428	0.92[EUR][1000 genomes]
rs16874557	0.85[EUR][1000 genomes]
rs57356491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73309264	0.92[EUR][1000 genomes]
rs73309267	0.92[EUR][1000 genomes]
rs73699586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73699588	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73699591	0.85[EUR][1000 genomes]
rs73699593	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73699594	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73699596	1.00[EUR][1000 genomes]
rs7826722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7827001	0.92[EUR][1000 genomes]
rs7830033	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7838299	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107530400-107572800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:107552600-107570600	Weak transcription	NH-A	brain
4	chr8:107568200-107570800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr8:107568200-107572800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr8:107568800-107574000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr8:107569200-107580600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:107569400-107571800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:107569400-107572400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr8:107569600-107573000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:107569600-107573600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:107570200-107571200	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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