Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10000107	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10007847	0.81[EUR][1000 genomes]
rs10022340	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1016511	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10516766	0.81[EUR][1000 genomes]
rs10516767	0.81[EUR][1000 genomes]
rs13435823	0.81[EUR][1000 genomes]
rs1546492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011143	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011177	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17410455	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17411008	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17411091	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28434164	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28523568	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28538646	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28605002	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28721934	0.81[EUR][1000 genomes]
rs723570	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72660111	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs893038	0.81[EUR][1000 genomes]
rs893039	0.81[EUR][1000 genomes]
rs9990941	0.81[EUR][1000 genomes]
rs9997854	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879519	chr4:86786204-86871282	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753470	chr4:86804078-86844350	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86788000-86812400	Weak transcription	HSMM	muscle
2	chr4:86788200-86812000	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:86790800-86835400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:86791200-86844400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:86808200-86846000	Weak transcription	HUVEC	blood vessel
6	chr4:86810800-86812000	Enhancers	Stomach Mucosa	stomach
7	chr4:86810800-86812200	Enhancers	Primary B cells from peripheral blood	blood
8	chr4:86811200-86822800	Weak transcription	Primary B cells from cord blood	blood
9	chr4:86811600-86812200	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr4:86811600-86812400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:86811800-86812000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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