Variant report

Variant	rs17011177
Chromosome Location	chr4:86830058-86830059
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10007847	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1016510	0.81[CHB][hapmap]
rs1016511	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10516766	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10516767	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13435741	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13435823	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1473009	0.81[CHB][hapmap]
rs1510582	0.82[CHB][hapmap]
rs1546491	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1546492	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17011143	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17011196	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17410455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17411008	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17411091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1848917	0.81[CHB][hapmap]
rs1961436	1.00[CEU][hapmap]
rs28434164	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28523568	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28538646	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28605002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28721934	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2904082	0.82[CHB][hapmap]
rs6531882	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6851522	0.82[CHB][hapmap]
rs723570	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72660111	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7666429	0.81[CHB][hapmap]
rs893038	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs893039	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9990941	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9997854	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879519	chr4:86786204-86871282	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753470	chr4:86804078-86844350	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879520	chr4:86829529-86918232	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86790800-86835400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:86791200-86844400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:86808200-86846000	Weak transcription	HUVEC	blood vessel
4	chr4:86812200-86831200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr4:86812400-86831000	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:86815800-86831000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:86815800-86842800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:86818000-86831000	Weak transcription	Pancreas	Pancrea
9	chr4:86818400-86831200	Weak transcription	Right Ventricle	heart
10	chr4:86823800-86832400	Weak transcription	NHDF-Ad	bronchial
11	chr4:86825600-86831000	Weak transcription	Left Ventricle	heart
12	chr4:86826400-86830600	Weak transcription	Adipose Nuclei	Adipose
13	chr4:86826800-86845400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:86827200-86831000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:86827400-86831000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:86827400-86834200	Weak transcription	Stomach Mucosa	stomach
17	chr4:86827600-86835400	Weak transcription	Small Intestine	intestine
18	chr4:86827600-86850600	Weak transcription	Spleen	Spleen
19	chr4:86828200-86831000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:86828200-86831200	Weak transcription	Ovary	ovary
21	chr4:86828800-86830200	Weak transcription	Fetal Kidney	kidney
22	chr4:86828800-86834000	Weak transcription	Fetal Intestine Large	intestine
23	chr4:86828800-86834200	Weak transcription	Fetal Intestine Small	intestine
24	chr4:86829600-86831000	Weak transcription	Gastric	stomach
25	chr4:86829600-86843800	Weak transcription	Primary B cells from cord blood	blood

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