Variant report

Variant	rs10516766
Chromosome Location	chr4:86836423-86836424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10006104	0.87[CHB][hapmap]
rs10007847	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1016511	0.89[EUR][1000 genomes]
rs10516767	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11930286	0.87[CHB][hapmap]
rs12500273	0.83[LWK][hapmap]
rs12651053	0.87[CHB][hapmap]
rs13110329	0.83[LWK][hapmap]
rs13435741	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13435823	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546491	0.81[EUR][1000 genomes]
rs1546492	0.81[EUR][1000 genomes]
rs17011143	1.00[CEU][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.83[EUR][1000 genomes]
rs17011177	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17011196	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17410455	1.00[CEU][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs17411008	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17411091	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1961436	1.00[CEU][hapmap]
rs2280036	0.92[ASN][1000 genomes]
rs28434164	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28523568	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28538646	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28605002	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28713621	0.87[CHB][hapmap]
rs28721934	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4693752	0.83[LWK][hapmap]
rs6531882	1.00[CEU][hapmap]
rs6824722	0.87[CHB][hapmap]
rs6838333	0.83[LWK][hapmap]
rs723570	1.00[CEU][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72660111	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs893038	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs893039	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9307013	0.87[CHB][hapmap]
rs9990941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997854	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879519	chr4:86786204-86871282	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753470	chr4:86804078-86844350	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879520	chr4:86829529-86918232	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86791200-86844400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:86808200-86846000	Weak transcription	HUVEC	blood vessel
3	chr4:86815800-86842800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:86826800-86845400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:86827600-86850600	Weak transcription	Spleen	Spleen
6	chr4:86829600-86843800	Weak transcription	Primary B cells from cord blood	blood
7	chr4:86831200-86851000	Weak transcription	Aorta	Aorta
8	chr4:86832400-86842800	Weak transcription	Pancreas	Pancrea
9	chr4:86832400-86843800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr4:86834600-86841000	Weak transcription	A549	lung
11	chr4:86835600-86840400	Weak transcription	Stomach Mucosa	stomach
12	chr4:86836000-86848800	Weak transcription	Fetal Kidney	kidney

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