Variant report

Variant	rs28523568
Chromosome Location	chr4:86825565-86825566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10007847	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1016511	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10516766	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10516767	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13435741	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13435823	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1546491	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1546492	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17011143	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17011177	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011196	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17410455	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17411008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17411091	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28434164	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28538646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28605002	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28721934	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs723570	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72660111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893038	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs893039	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9990941	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9997854	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879519	chr4:86786204-86871282	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753470	chr4:86804078-86844350	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86790800-86835400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:86791200-86844400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:86808200-86846000	Weak transcription	HUVEC	blood vessel
4	chr4:86812200-86831200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr4:86812400-86831000	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:86815800-86831000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:86815800-86842800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:86818000-86831000	Weak transcription	Pancreas	Pancrea
9	chr4:86818400-86831200	Weak transcription	Right Ventricle	heart
10	chr4:86821600-86827200	Weak transcription	Fetal Kidney	kidney
11	chr4:86823200-86828600	Weak transcription	Primary B cells from cord blood	blood
12	chr4:86823600-86825800	Weak transcription	A549	lung
13	chr4:86823800-86832400	Weak transcription	NHDF-Ad	bronchial
14	chr4:86825200-86825800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr4:86825400-86825600	Enhancers	Left Ventricle	heart
16	chr4:86825400-86826800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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