Variant report

Variant	rs6531882
Chromosome Location	chr4:86826382-86826383
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10006104	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10018236	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10026288	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1016510	0.90[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1016511	1.00[CHB][hapmap]
rs10516766	1.00[CEU][hapmap]
rs10516767	1.00[CEU][hapmap]
rs11930286	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12651053	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1467072	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473009	0.90[CHB][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473011	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510580	0.89[EUR][1000 genomes]
rs1510582	0.91[CHB][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011143	1.00[CEU][hapmap]
rs17011166	0.82[CHB][hapmap];0.95[ASN][1000 genomes]
rs17011172	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011177	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17011185	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17011196	1.00[CEU][hapmap]
rs17410455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs17411008	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1848917	0.90[CHB][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1961436	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28566811	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28572751	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28713621	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2904082	0.91[CHB][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2904083	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61561733	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6531877	0.89[EUR][1000 genomes]
rs6810816	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6811531	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6819930	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6820175	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6824722	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6850630	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6851522	0.90[CHB][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723570	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs7654702	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7663884	0.93[ASN][1000 genomes]
rs7666429	0.90[CHB][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7669712	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7685704	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7690939	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7692633	0.89[EUR][1000 genomes]
rs7692989	0.89[EUR][1000 genomes]
rs7693039	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7699391	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9307011	0.86[EUR][1000 genomes]
rs9307013	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs958887	0.94[ASN][1000 genomes]
rs9790433	0.89[EUR][1000 genomes]
rs9990941	1.00[CEU][hapmap]
rs9997854	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879519	chr4:86786204-86871282	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753470	chr4:86804078-86844350	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86790800-86835400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:86791200-86844400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:86808200-86846000	Weak transcription	HUVEC	blood vessel
4	chr4:86812200-86831200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr4:86812400-86831000	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:86815800-86831000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:86815800-86842800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:86818000-86831000	Weak transcription	Pancreas	Pancrea
9	chr4:86818400-86831200	Weak transcription	Right Ventricle	heart
10	chr4:86821600-86827200	Weak transcription	Fetal Kidney	kidney
11	chr4:86823200-86828600	Weak transcription	Primary B cells from cord blood	blood
12	chr4:86823800-86832400	Weak transcription	NHDF-Ad	bronchial
13	chr4:86825400-86826800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:86825600-86826400	Enhancers	Adipose Nuclei	Adipose
15	chr4:86825600-86831000	Weak transcription	Left Ventricle	heart
16	chr4:86825800-86827200	Enhancers	Pancreatic Islets	Pancreatic Islet

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