Variant report

Variant	rs1549681
Chromosome Location	chr5:36538074-36538075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2115520	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2562535	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2562536	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2562537	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2562551	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2562560	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2562565	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2731889	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2731896	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6451295	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6864523	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1549681	NPR3	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36534400-36539600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr5:36535400-36538400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:36535800-36538200	Enhancers	Brain Cingulate Gyrus	brain
4	chr5:36536000-36538800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:36536200-36538200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:36536400-36538200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:36537200-36538400	Enhancers	Brain Anterior Caudate	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links