Variant report

Variant	rs2731896
Chromosome Location	chr5:36536841-36536842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1549681	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2115520	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2562535	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2562536	0.88[ASN][1000 genomes]
rs2562537	0.88[ASN][1000 genomes]
rs2562551	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2562560	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2562565	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2731889	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6451295	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6864523	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881666	chr5:36498183-36537369	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36523000-36537800	Weak transcription	Right Ventricle	heart
2	chr5:36525200-36537200	Weak transcription	Brain Anterior Caudate	brain
3	chr5:36533400-36537600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:36534400-36539600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:36535400-36537600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr5:36535400-36538400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:36535600-36537000	Enhancers	Brain Hippocampus Middle	brain
8	chr5:36535800-36537800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:36535800-36537800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:36535800-36538200	Enhancers	Brain Cingulate Gyrus	brain
11	chr5:36536000-36538800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:36536200-36537200	Weak transcription	Esophagus	oesophagus
13	chr5:36536200-36537400	Weak transcription	Left Ventricle	heart
14	chr5:36536200-36538200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:36536400-36537000	Enhancers	Hela-S3	cervix
16	chr5:36536400-36538000	Enhancers	Brain Substantia Nigra	brain
17	chr5:36536400-36538200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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