Variant report

Variant	rs2562560
Chromosome Location	chr5:36528546-36528547
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1549681	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2115520	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2562535	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2562536	0.96[ASN][1000 genomes]
rs2562537	0.96[ASN][1000 genomes]
rs2562551	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2562565	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2731889	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2731896	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4541684	0.85[AMR][1000 genomes]
rs6451295	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6864523	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881666	chr5:36498183-36537369	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36523000-36530200	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:36523000-36535400	Weak transcription	Psoas Muscle	Psoas
3	chr5:36523000-36537800	Weak transcription	Right Ventricle	heart
4	chr5:36523200-36528600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:36524000-36529000	Weak transcription	Esophagus	oesophagus
6	chr5:36524600-36528800	Weak transcription	Adipose Nuclei	Adipose
7	chr5:36525200-36537200	Weak transcription	Brain Anterior Caudate	brain
8	chr5:36525400-36528600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:36526200-36531800	Enhancers	Placenta	Placenta
10	chr5:36527000-36528800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:36527200-36528600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:36527400-36528600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:36527400-36528600	Weak transcription	HMEC	breast
14	chr5:36527400-36528800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:36528000-36529800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr5:36528400-36529200	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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