Variant report

Variant	rs4541684
Chromosome Location	chr5:36521727-36521728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1125237	0.82[ASN][1000 genomes]
rs2455263	0.81[ASN][1000 genomes]
rs2562560	0.85[AMR][1000 genomes]
rs2937536	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2937537	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2937540	0.82[ASN][1000 genomes]
rs2956573	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2956575	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2956582	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2967056	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2967060	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2967064	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2967065	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2967067	0.82[ASN][1000 genomes]
rs2967069	0.82[ASN][1000 genomes]
rs4371785	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56308562	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6864523	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881666	chr5:36498183-36537369	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3345119	chr5:36519395-36523593	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	esv3324849	chr5:36520445-36522943	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4541684	OSMR	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36521200-36523000	Enhancers	Esophagus	oesophagus
2	chr5:36521200-36523200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr5:36521200-36523600	Weak transcription	Fetal Brain Female	brain
4	chr5:36521200-36524800	Enhancers	Right Atrium	heart
5	chr5:36521400-36522200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:36521400-36523000	Enhancers	Right Ventricle	heart
7	chr5:36521400-36524200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr5:36521400-36525200	Enhancers	Left Ventricle	heart
9	chr5:36521600-36522000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:36521600-36523000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:36521600-36523000	Enhancers	Psoas Muscle	Psoas
12	chr5:36521600-36523000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr5:36521600-36524400	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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