Variant report

Variant	rs2967067
Chromosome Location	chr5:36495595-36495596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1125237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455263	0.99[ASN][1000 genomes]
rs2937536	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2937537	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2937540	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2956573	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2956575	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2956582	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967056	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967060	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967064	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967065	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967069	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4371785	0.81[ASN][1000 genomes]
rs4541684	0.82[ASN][1000 genomes]
rs56308562	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2967067	PRLR	cis	cerebellum	SCAN

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36490400-36495800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:36491200-36499800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr5:36493200-36495800	Enhancers	NHDF-Ad	bronchial
4	chr5:36493400-36495600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:36493400-36495600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:36493400-36495600	Enhancers	HMEC	breast
7	chr5:36493400-36496800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:36493600-36495800	Enhancers	NHLF	lung
9	chr5:36493600-36495800	Enhancers	Osteobl	bone
10	chr5:36494000-36496400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr5:36494600-36495600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:36494600-36495800	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr5:36494800-36495600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:36494800-36495800	Flanking Active TSS	Hela-S3	cervix
15	chr5:36494800-36496200	Enhancers	Fetal Stomach	stomach
16	chr5:36494800-36496400	Enhancers	Brain Cingulate Gyrus	brain
17	chr5:36494800-36496600	Enhancers	Brain Substantia Nigra	brain
18	chr5:36495000-36495600	Flanking Active TSS	Stomach Smooth Muscle	stomach
19	chr5:36495000-36496400	Enhancers	Rectal Smooth Muscle	rectum
20	chr5:36495200-36495600	Enhancers	Fetal Lung	lung
21	chr5:36495200-36495600	Enhancers	Pancreas	Pancrea
22	chr5:36495200-36495600	Flanking Active TSS	NH-A	brain
23	chr5:36495200-36495800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr5:36495200-36495800	Enhancers	HSMM	muscle
25	chr5:36495200-36496000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr5:36495200-36496200	Enhancers	Colon Smooth Muscle	Colon
27	chr5:36495200-36497600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr5:36495400-36495600	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
29	chr5:36495400-36496200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr5:36495400-36496200	Weak transcription	Brain Angular Gyrus	brain
31	chr5:36495400-36497400	Weak transcription	Gastric	stomach

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