Variant report

Variant	rs56308562
Chromosome Location	chr5:36507394-36507395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36414161..36415558-chr5:36507119..36508035,4	MCF-7	breast:
2	chr5:36415574..36416438-chr5:36507363..36507957,2	MCF-7	breast:
3	chr5:36414583..36415587-chr5:36506983..36508090,7	K562	blood:
4	chr5:36500289..36503797-chr5:36504246..36507630,3	K562	blood:
5	chr5:36507187..36508089-chr5:36692700..36694128,7	MCF-7	breast:
6	chr5:36412717..36413437-chr5:36507212..36508126,2	K562	blood:
7	chr5:36079366..36080125-chr5:36507043..36508002,2	K562	blood:
8	chr5:36415574..36416124-chr5:36507070..36507980,2	MCF-7	breast:
9	chr5:36265104..36265888-chr5:36507183..36507807,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1125237	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455263	0.99[ASN][1000 genomes]
rs2937536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2937537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2937540	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2956573	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2956575	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2956582	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967060	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967061	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2967064	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967065	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967067	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967069	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4371785	0.81[ASN][1000 genomes]
rs4541684	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881666	chr5:36498183-36537369	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36503200-36507600	Weak transcription	NHEK	skin
2	chr5:36504000-36507600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:36504400-36508400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:36505400-36507600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:36505400-36507800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:36505400-36508400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:36507200-36508000	Enhancers	Hela-S3	cervix
8	chr5:36507200-36508600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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