Variant report

Variant	rs2937540
Chromosome Location	chr5:36494037-36494038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36492000..36494291-chr5:36683207..36685275,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1125237	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455263	0.99[ASN][1000 genomes]
rs2937536	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2937537	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2956573	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2956575	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2956582	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967056	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967060	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967064	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967065	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967067	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967069	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4371785	0.81[ASN][1000 genomes]
rs4541684	0.82[ASN][1000 genomes]
rs56308562	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2937540	PRLR	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36490400-36495800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:36491200-36499800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr5:36492400-36494800	Enhancers	Hela-S3	cervix
4	chr5:36492400-36495200	Weak transcription	Adipose Nuclei	Adipose
5	chr5:36492400-36495200	Weak transcription	Lung	lung
6	chr5:36492400-36495200	Weak transcription	Pancreas	Pancrea
7	chr5:36492600-36494200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr5:36492600-36495200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:36493200-36495200	Enhancers	NH-A	brain
10	chr5:36493200-36495800	Enhancers	NHDF-Ad	bronchial
11	chr5:36493400-36495400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:36493400-36495400	Enhancers	NHEK	skin
13	chr5:36493400-36495600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:36493400-36495600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:36493400-36495600	Enhancers	HMEC	breast
16	chr5:36493400-36496800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr5:36493600-36494200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr5:36493600-36494200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:36493600-36495800	Enhancers	NHLF	lung
20	chr5:36493600-36495800	Enhancers	Osteobl	bone
21	chr5:36493800-36495200	Weak transcription	HSMM	muscle
22	chr5:36494000-36495000	Enhancers	Stomach Smooth Muscle	stomach
23	chr5:36494000-36495200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr5:36494000-36495200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr5:36494000-36496400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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