Variant report

Variant	rs2967069
Chromosome Location	chr5:36493437-36493438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36492000..36494291-chr5:36683207..36685275,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1125237	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455263	0.99[ASN][1000 genomes]
rs2937536	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2937537	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2937540	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2956573	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2956575	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2956582	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967056	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967060	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967064	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967065	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967067	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4371785	0.81[ASN][1000 genomes]
rs4541684	0.82[ASN][1000 genomes]
rs56308562	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36488200-36494000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:36490400-36495800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:36491200-36499800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:36492400-36494000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr5:36492400-36494800	Enhancers	Hela-S3	cervix
6	chr5:36492400-36495200	Weak transcription	Adipose Nuclei	Adipose
7	chr5:36492400-36495200	Weak transcription	Lung	lung
8	chr5:36492400-36495200	Weak transcription	Pancreas	Pancrea
9	chr5:36492600-36494200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr5:36492600-36495200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:36493200-36493800	Enhancers	HSMM	muscle
12	chr5:36493200-36494000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr5:36493200-36494000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr5:36493200-36495200	Enhancers	NH-A	brain
15	chr5:36493200-36495800	Enhancers	NHDF-Ad	bronchial
16	chr5:36493400-36493600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr5:36493400-36493600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:36493400-36495400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:36493400-36495400	Enhancers	NHEK	skin
20	chr5:36493400-36495600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:36493400-36495600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:36493400-36495600	Enhancers	HMEC	breast
23	chr5:36493400-36496800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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