Variant report

Variant	rs2967056
Chromosome Location	chr5:36503713-36503714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36500289..36503797-chr5:36504246..36507630,3	K562	blood:
2	chr5:36499725..36501562-chr5:36503562..36506280,2	MCF-7	breast:
3	chr5:36498212..36500819-chr5:36503623..36505516,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1125237	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455263	0.99[ASN][1000 genomes]
rs2937536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2937537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2937540	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2956573	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2956575	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2956582	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967060	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967061	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2967064	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967065	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967067	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2967069	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4371785	0.81[ASN][1000 genomes]
rs4541684	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56308562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881666	chr5:36498183-36537369	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36501800-36504000	Enhancers	HMEC	breast
2	chr5:36501800-36504200	Enhancers	HSMMtube	muscle
3	chr5:36501800-36504600	Enhancers	HSMM	muscle
4	chr5:36501800-36506000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:36502000-36503800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:36502000-36504000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:36502000-36504000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr5:36502000-36504000	Enhancers	NH-A	brain
9	chr5:36502000-36504200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:36502000-36504400	Enhancers	NHDF-Ad	bronchial
11	chr5:36502000-36504400	Enhancers	Osteobl	bone
12	chr5:36502200-36504600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:36502200-36504600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr5:36502400-36503800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr5:36502400-36504200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:36502600-36504600	Enhancers	Adipose Nuclei	Adipose
17	chr5:36502800-36504400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr5:36503000-36503800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr5:36503000-36505000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:36503200-36504000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr5:36503200-36504800	Weak transcription	Colon Smooth Muscle	Colon
22	chr5:36503200-36505600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr5:36503200-36507600	Weak transcription	NHEK	skin
24	chr5:36503400-36504200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr5:36503400-36505400	Enhancers	Hela-S3	cervix
26	chr5:36503600-36504400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr5:36503600-36504400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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