Variant report

Variant	rs6451295
Chromosome Location	chr5:36533856-36533857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1549681	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2115520	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2562535	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2562536	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2562537	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2562551	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2562560	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2562565	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2731889	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2731896	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6864523	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881666	chr5:36498183-36537369	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36523000-36535400	Weak transcription	Psoas Muscle	Psoas
2	chr5:36523000-36537800	Weak transcription	Right Ventricle	heart
3	chr5:36525200-36537200	Weak transcription	Brain Anterior Caudate	brain
4	chr5:36529200-36535600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:36530800-36535600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:36531400-36534400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr5:36531400-36535400	Weak transcription	Left Ventricle	heart
8	chr5:36531800-36535000	Weak transcription	Placenta	Placenta
9	chr5:36533400-36537600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links