Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1009766	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs1473431	0.89[ASN][1000 genomes]
rs1480034	0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs1480035	0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs16930287	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16930293	0.86[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs1871554	0.92[ASN][1000 genomes]
rs1871555	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4523784	0.87[ASN][1000 genomes]
rs56198343	0.90[ASN][1000 genomes]
rs56713764	0.90[ASN][1000 genomes]
rs59428444	0.87[ASN][1000 genomes]
rs6487539	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6487540	0.90[ASN][1000 genomes]
rs6487541	0.95[CHD][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs73084774	0.87[ASN][1000 genomes]
rs73084782	0.87[ASN][1000 genomes]
rs73086945	0.87[ASN][1000 genomes]
rs73086947	0.87[ASN][1000 genomes]
rs73086950	0.87[ASN][1000 genomes]
rs73086956	0.92[ASN][1000 genomes]
rs73086959	0.92[ASN][1000 genomes]
rs7969850	0.86[CHB][hapmap];0.85[CHD][hapmap];0.81[ASN][1000 genomes]
rs7979281	0.90[ASN][1000 genomes]
rs875296	0.92[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv648	chr12:26330291-26375186	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1552041	GPR148	trans	cerebellum	SCAN
rs1552041	ST8SIA1	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26338800-26348200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:26341800-26348000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:26341800-26348000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:26341800-26348000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:26341800-26348000	Weak transcription	A549	lung
6	chr12:26341800-26348000	Weak transcription	NH-A	brain
7	chr12:26341800-26348000	Weak transcription	NHEK	skin
8	chr12:26341800-26348000	Weak transcription	Osteobl	bone
9	chr12:26343000-26343600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr12:26343200-26343600	Enhancers	H1 Cell Line	embryonic stem cell

Quick Search: