Variant report
| Variant | rs73086959 |
|---|---|
| Chromosome Location | chr12:26335455-26335456 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs1009766 | 0.84[ASN][1000 genomes] |
| rs1473431 | 0.82[ASN][1000 genomes] |
| rs1480034 | 0.83[ASN][1000 genomes] |
| rs1480035 | 0.83[ASN][1000 genomes] |
| rs1552041 | 0.92[ASN][1000 genomes] |
| rs16930287 | 0.92[ASN][1000 genomes] |
| rs16930293 | 0.94[ASN][1000 genomes] |
| rs1871554 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1871555 | 0.92[ASN][1000 genomes] |
| rs4517620 | 0.99[EUR][1000 genomes] |
| rs4523784 | 0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs55775247 | 0.99[EUR][1000 genomes] |
| rs56198343 | 0.83[ASN][1000 genomes] |
| rs56713764 | 0.91[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs59428444 | 0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6487539 | 0.83[ASN][1000 genomes] |
| rs6487540 | 0.83[ASN][1000 genomes] |
| rs6487541 | 0.83[ASN][1000 genomes] |
| rs73082972 | 0.87[EUR][1000 genomes] |
| rs73084743 | 0.99[EUR][1000 genomes] |
| rs73084753 | 0.99[EUR][1000 genomes] |
| rs73084765 | 0.96[EUR][1000 genomes] |
| rs73084774 | 0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73084782 | 0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73084785 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs73086945 | 0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73086947 | 0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73086950 | 0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73086956 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7969850 | 0.86[ASN][1000 genomes] |
| rs7979281 | 0.83[ASN][1000 genomes] |
| rs875296 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv648 | chr12:26330291-26375186 | Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:26330800-26337800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr12:26332400-26338200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
