Variant report

Variant	rs1871554
Chromosome Location	chr12:26340058-26340059
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1009766	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs12578121	0.85[CHD][hapmap]
rs1473431	0.82[ASN][1000 genomes]
rs1480034	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1480035	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1552041	1.00[CHB][hapmap];0.86[CHD][hapmap];0.92[JPT][hapmap];0.81[TSI][hapmap];0.92[ASN][1000 genomes]
rs16930287	0.92[ASN][1000 genomes]
rs16930293	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1871555	0.92[ASN][1000 genomes]
rs4517620	0.82[EUR][1000 genomes]
rs4523784	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55775247	0.82[EUR][1000 genomes]
rs56198343	0.83[ASN][1000 genomes]
rs56713764	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59428444	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6487539	0.83[ASN][1000 genomes]
rs6487540	0.83[ASN][1000 genomes]
rs6487541	0.82[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs73084743	0.82[EUR][1000 genomes]
rs73084753	0.82[EUR][1000 genomes]
rs73084774	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73084782	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73086945	0.95[ASN][1000 genomes]
rs73086947	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73086950	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73086956	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086959	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7969850	0.86[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs7979281	0.83[ASN][1000 genomes]
rs875296	0.85[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv648	chr12:26330291-26375186	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26337800-26341800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:26338000-26341800	Enhancers	HMEC	breast
3	chr12:26338200-26341800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr12:26338200-26341800	Enhancers	NHEK	skin
5	chr12:26338400-26340200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr12:26338400-26341800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr12:26338400-26341800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr12:26338600-26340200	Enhancers	Psoas Muscle	Psoas
9	chr12:26338600-26341000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr12:26338800-26340800	Weak transcription	NH-A	brain
11	chr12:26338800-26348200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr12:26339600-26340800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr12:26339600-26341400	Enhancers	Hela-S3	cervix
14	chr12:26339600-26341800	Enhancers	NHDF-Ad	bronchial
15	chr12:26339800-26340800	Weak transcription	Brain Substantia Nigra	brain
16	chr12:26339800-26341400	Enhancers	HSMM	muscle
17	chr12:26339800-26342000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr12:26340000-26340200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr12:26340000-26340200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr12:26340000-26340200	Enhancers	Placenta	Placenta
21	chr12:26340000-26340200	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr12:26340000-26341400	Enhancers	NHLF	lung
23	chr12:26340000-26341800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr12:26340000-26341800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr12:26340000-26341800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr12:26340000-26341800	Enhancers	A549	lung
27	chr12:26340000-26342000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr12:26340000-26342600	Enhancers	HSMMtube	muscle

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