Variant report

Variant	rs1556095
Chromosome Location	chr9:7209487-7209488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16925577	0.90[AMR][1000 genomes]
rs2104683	0.85[EUR][1000 genomes]
rs2183119	0.87[AMR][1000 genomes]
rs60595861	1.00[EUR][1000 genomes]
rs7018500	0.84[AMR][1000 genomes]
rs72705372	0.90[AMR][1000 genomes]
rs72705377	0.87[AMR][1000 genomes]
rs72705379	0.87[AMR][1000 genomes]
rs72705382	0.84[AMR][1000 genomes]
rs72705384	0.84[AMR][1000 genomes]
rs913578	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv613259	chr9:7032776-7541338	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1015874	chr9:7048807-7434890	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv539971	chr9:7048807-7434890	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv892192	chr9:7153009-7257340	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
7	esv2758178	chr9:7175387-7482982	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv2759662	chr9:7175387-7482982	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1032465	chr9:7182123-7409755	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv539972	chr9:7182123-7409755	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1020908	chr9:7188471-7358893	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv539973	chr9:7188471-7358893	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1021049	chr9:7192313-7288729	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv519922	chr9:7203306-7212446	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	nsv892193	chr9:7208342-7248916	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7206200-7210800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:7206400-7212200	Weak transcription	Fetal Heart	heart
3	chr9:7208800-7209600	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr9:7208800-7209800	Active TSS	Brain Hippocampus Middle	brain
5	chr9:7208800-7209800	Active TSS	Brain Substantia Nigra	brain
6	chr9:7208800-7212000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr9:7208800-7212600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr9:7209000-7209600	Active TSS	Brain Anterior Caudate	brain
9	chr9:7209000-7209600	Active TSS	NH-A	brain
10	chr9:7209000-7209800	Active TSS	Brain Angular Gyrus	brain
11	chr9:7209000-7209800	Active TSS	Brain Cingulate Gyrus	brain
12	chr9:7209000-7209800	Flanking Active TSS	Brain Germinal Matrix	brain
13	chr9:7209000-7211000	Weak transcription	Fetal Brain Male	brain
14	chr9:7209200-7209600	Active TSS	Fetal Brain Female	brain
15	chr9:7209200-7209600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr9:7209200-7210200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:7209400-7209600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr9:7209400-7209800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
19	chr9:7209400-7210200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr9:7209400-7210600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
21	chr9:7209400-7212200	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links