Variant report

Variant	rs1567541
Chromosome Location	chr4:26240856-26240857
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11933748	0.87[CEU][hapmap];0.85[GIH][hapmap]
rs16878233	0.87[CEU][hapmap]
rs16878236	0.87[CEU][hapmap]
rs6847065	1.00[ASW][hapmap];0.85[MEX][hapmap]
rs7677206	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26221400-26244600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr4:26239200-26242200	Enhancers	NHDF-Ad	bronchial
3	chr4:26239400-26241000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:26239400-26242000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:26239600-26242800	Enhancers	Fetal Muscle Leg	muscle
6	chr4:26239800-26241000	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr4:26239800-26241400	Enhancers	Placenta	Placenta
8	chr4:26239800-26242400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:26239800-26242800	Enhancers	Fetal Brain Male	brain
10	chr4:26240000-26241200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:26240000-26241200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:26240000-26241400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr4:26240000-26241400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr4:26240000-26241400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr4:26240000-26241400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:26240000-26241400	Enhancers	Fetal Lung	lung
17	chr4:26240000-26241400	Enhancers	Stomach Mucosa	stomach
18	chr4:26240000-26241400	Enhancers	NHLF	lung
19	chr4:26240000-26241800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:26240000-26242200	Enhancers	Adipose Nuclei	Adipose
21	chr4:26240000-26242600	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr4:26240200-26241000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr4:26240200-26241000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr4:26240200-26241000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr4:26240200-26241000	Flanking Active TSS	Brain Cingulate Gyrus	brain
26	chr4:26240200-26241000	Flanking Active TSS	Brain Substantia Nigra	brain
27	chr4:26240200-26241000	Flanking Active TSS	Fetal Brain Female	brain
28	chr4:26240200-26241000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr4:26240200-26241200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr4:26240200-26241200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr4:26240200-26241200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr4:26240200-26241200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr4:26240200-26241200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr4:26240200-26241200	Flanking Active TSS	Brain Anterior Caudate	brain
35	chr4:26240200-26241200	Flanking Active TSS	Duodenum Mucosa	Duodenum
36	chr4:26240200-26241200	Flanking Active TSS	HepG2	liver
37	chr4:26240200-26241200	Flanking Active TSS	HSMMtube	muscle
38	chr4:26240200-26241400	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr4:26240200-26241400	Flanking Active TSS	Brain Hippocampus Middle	brain
40	chr4:26240200-26241400	Enhancers	Colon Smooth Muscle	Colon
41	chr4:26240200-26241400	Enhancers	Fetal Stomach	stomach
42	chr4:26240200-26241400	Flanking Active TSS	HSMM	muscle
43	chr4:26240200-26241800	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr4:26240400-26241000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr4:26240400-26241000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr4:26240400-26241000	Enhancers	Placenta Amnion	Placenta Amnion
47	chr4:26240400-26241200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr4:26240400-26241200	Active TSS	Brain Angular Gyrus	brain
49	chr4:26240400-26241200	Flanking Active TSS	NH-A	brain
50	chr4:26240400-26241200	Flanking Active TSS	Osteobl	bone

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