Variant report

Variant	rs1570551
Chromosome Location	chr13:51893834-51893835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2897913	0.85[ASN][1000 genomes]
rs4566051	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6561632	0.81[EUR][1000 genomes]
rs6561633	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs927607	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs927608	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526747	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535639	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9535641	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9535647	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs966777	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51867600-51910800	Weak transcription	Pancreas	Pancrea
2	chr13:51889400-51901200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr13:51889800-51896200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr13:51890000-51897200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr13:51890000-51899200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:51890000-51904800	Weak transcription	Right Atrium	heart
7	chr13:51890200-51895400	Weak transcription	Brain Hippocampus Middle	brain
8	chr13:51890200-51896200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr13:51890200-51897400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr13:51890200-51899400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr13:51890400-51895600	Weak transcription	Brain Anterior Caudate	brain
12	chr13:51890400-51896200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr13:51890600-51898400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr13:51892200-51897400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr13:51892400-51897200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr13:51892600-51895600	Weak transcription	Osteobl	bone
17	chr13:51893600-51894000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr13:51893800-51894000	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr13:51893800-51898400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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