Variant report

Variant	rs6561632
Chromosome Location	chr13:51880895-51880896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1570551	0.81[EUR][1000 genomes]
rs2408359	0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4566051	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6561631	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs6561633	0.82[EUR][1000 genomes]
rs7325958	0.91[EUR][1000 genomes]
rs927607	0.82[EUR][1000 genomes]
rs927608	0.82[EUR][1000 genomes]
rs9526747	0.82[EUR][1000 genomes]
rs9535639	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9535641	0.82[EUR][1000 genomes]
rs9535647	0.84[CHD][hapmap]
rs966777	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51853000-51889600	Weak transcription	Brain Angular Gyrus	brain
2	chr13:51867600-51910800	Weak transcription	Pancreas	Pancrea
3	chr13:51877000-51887800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:51877000-51889200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:51877600-51882800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr13:51877600-51886600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:51877800-51885200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr13:51877800-51890000	Weak transcription	Lung	lung
9	chr13:51879800-51882800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr13:51879800-51889200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr13:51880000-51881400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr13:51880000-51882800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr13:51880000-51883000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr13:51880000-51885400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr13:51880400-51882800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr13:51880400-51882800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr13:51880400-51882800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr13:51880400-51882800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr13:51880400-51885000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr13:51880600-51885200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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