Variant report

Variant	rs1571637
Chromosome Location	chr9:71611202-71611203
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71587881..71589909-chr9:71610346..71613287,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10117400	1.00[EUR][1000 genomes]
rs10123076	1.00[EUR][1000 genomes]
rs10735638	1.00[EUR][1000 genomes]
rs10735639	1.00[EUR][1000 genomes]
rs10746976	1.00[EUR][1000 genomes]
rs10869560	1.00[EUR][1000 genomes]
rs1414953	1.00[EUR][1000 genomes]
rs17059748	1.00[EUR][1000 genomes]
rs2027206	1.00[EUR][1000 genomes]
rs2027207	1.00[EUR][1000 genomes]
rs2309386	1.00[EUR][1000 genomes]
rs2309387	1.00[EUR][1000 genomes]
rs4145886	1.00[EUR][1000 genomes]
rs4745400	1.00[EUR][1000 genomes]
rs6560466	1.00[EUR][1000 genomes]
rs7038312	1.00[EUR][1000 genomes]
rs73443580	1.00[EUR][1000 genomes]
rs73647033	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422258	chr9:71234845-71663340	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1017903	chr9:71276951-71690579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1053402	chr9:71399722-71819949	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv540146	chr9:71399722-71819949	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv1043689	chr9:71399922-71800338	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv540147	chr9:71399922-71800338	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv1047540	chr9:71401918-71803639	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
9	nsv931684	chr9:71417110-71957723	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	nsv466393	chr9:71453443-71704827	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv614547	chr9:71453443-71704827	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv1035823	chr9:71465139-71901672	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
14	nsv466396	chr9:71471912-71935577	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
15	nsv614548	chr9:71471912-71935577	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
16	nsv614549	chr9:71506459-71659280	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv1051798	chr9:71511805-71792032	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
18	nsv1035477	chr9:71511927-71959487	Enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
19	nsv466397	chr9:71574757-71843023	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
20	nsv614550	chr9:71574757-71843023	Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
21	nsv1050692	chr9:71578494-71843023	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
22	nsv893416	chr9:71597840-71888601	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
23	nsv1040539	chr9:71600042-71844108	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
24	nsv540149	chr9:71600042-71844108	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
25	nsv949664	chr9:71607398-71842391	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71594800-71628400	Weak transcription	Spleen	Spleen
2	chr9:71595200-71628000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:71595200-71631600	Weak transcription	Gastric	stomach
4	chr9:71595800-71626200	Weak transcription	Colonic Mucosa	Colon
5	chr9:71596200-71612200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:71597200-71613000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr9:71597200-71626000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr9:71597400-71611800	Weak transcription	Fetal Stomach	stomach
9	chr9:71598400-71613200	Weak transcription	Right Ventricle	heart
10	chr9:71598800-71623200	Weak transcription	Pancreas	Pancrea
11	chr9:71598800-71644600	Weak transcription	Right Atrium	heart
12	chr9:71599000-71613000	Weak transcription	Left Ventricle	heart
13	chr9:71600000-71612800	Weak transcription	K562	blood
14	chr9:71603800-71614600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:71604200-71617800	Strong transcription	Fetal Intestine Large	intestine
16	chr9:71605200-71611800	Weak transcription	Fetal Heart	heart
17	chr9:71606800-71623000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr9:71606800-71626800	Weak transcription	HepG2	liver
19	chr9:71607400-71630600	Weak transcription	Aorta	Aorta
20	chr9:71607600-71614200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr9:71607600-71628000	Weak transcription	Lung	lung
22	chr9:71608400-71613600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr9:71609200-71613000	Weak transcription	Fetal Intestine Small	intestine
24	chr9:71610000-71611600	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr9:71610000-71614600	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr9:71610400-71614600	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr9:71610600-71611600	Enhancers	Primary B cells from cord blood	blood
28	chr9:71610600-71612000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr9:71610800-71611400	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr9:71610800-71611600	Enhancers	Primary B cells from peripheral blood	blood
31	chr9:71610800-71611600	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr9:71610800-71611800	Enhancers	Primary T cells from cord blood	blood
33	chr9:71610800-71611800	Enhancers	GM12878-XiMat	blood
34	chr9:71610800-71612000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr9:71610800-71612000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr9:71610800-71612400	Active TSS	Brain Substantia Nigra	brain
37	chr9:71611000-71611400	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr9:71611000-71611400	Enhancers	Brain Angular Gyrus	brain
39	chr9:71611000-71611600	Enhancers	Primary hematopoietic stem cells	blood
40	chr9:71611000-71611600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr9:71611000-71611600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr9:71611000-71611600	Enhancers	Brain Anterior Caudate	brain
43	chr9:71611000-71611800	Enhancers	Brain Germinal Matrix	brain
44	chr9:71611000-71612800	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr9:71611000-71614600	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr9:71611200-71611400	Enhancers	Brain Hippocampus Middle	brain
47	chr9:71611200-71611600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
48	chr9:71611200-71611600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr9:71611200-71611800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr9:71611200-71611800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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