Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10507656	0.92[EUR][1000 genomes]
rs12861751	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12875061	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1514165	0.90[EUR][1000 genomes]
rs1548176	1.00[EUR][1000 genomes]
rs17058733	0.90[EUR][1000 genomes]
rs17058789	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17331929	0.90[EUR][1000 genomes]
rs2175869	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3127034	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35252142	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71434967	1.00[EUR][1000 genomes]
rs7317718	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7338113	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7982093	0.96[EUR][1000 genomes]
rs7985854	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs884318	0.94[EUR][1000 genomes]
rs884319	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9528209	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9528210	0.92[EUR][1000 genomes]
rs9538891	0.86[EUR][1000 genomes]
rs9538901	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9538907	0.96[EUR][1000 genomes]
rs9538920	1.00[EUR][1000 genomes]
rs9538923	0.98[EUR][1000 genomes]
rs9538925	0.98[EUR][1000 genomes]
rs9538937	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817223	chr13:60623429-61453435	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv900241	chr13:61217896-61368021	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832623	chr13:61303818-61468576	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1037954	chr13:61319533-61395907	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv561866	chr13:61328813-61388794	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61330200-61334600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:61330400-61335000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:61331200-61334600	Enhancers	Fetal Heart	heart
4	chr13:61331600-61334600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr13:61331800-61334600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr13:61332600-61334800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:61332600-61339400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr13:61333000-61339400	Weak transcription	Fetal Intestine Large	intestine
9	chr13:61333200-61334600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr13:61333400-61334600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr13:61333600-61334600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr13:61333800-61339400	Weak transcription	Fetal Intestine Small	intestine
13	chr13:61333800-61340000	Weak transcription	HMEC	breast
14	chr13:61334000-61339400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr13:61334200-61334600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr13:61334200-61334600	Enhancers	NHEK	skin
17	chr13:61334200-61335000	Enhancers	HUVEC	blood vessel
18	chr13:61334400-61334600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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