Variant report

Variant	rs17058789
Chromosome Location	chr13:61323995-61323996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10507656	0.90[EUR][1000 genomes]
rs12861751	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12875061	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1514165	0.92[EUR][1000 genomes]
rs1548176	0.94[EUR][1000 genomes]
rs1572023	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17058733	0.92[EUR][1000 genomes]
rs17331929	0.92[EUR][1000 genomes]
rs2175869	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3127034	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35252142	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71434967	0.94[EUR][1000 genomes]
rs7317718	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7338113	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7982093	0.98[EUR][1000 genomes]
rs7985854	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs884318	1.00[EUR][1000 genomes]
rs884319	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9528209	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9528210	0.98[EUR][1000 genomes]
rs9538891	0.88[EUR][1000 genomes]
rs9538901	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9538907	0.98[EUR][1000 genomes]
rs9538920	0.94[EUR][1000 genomes]
rs9538923	0.96[EUR][1000 genomes]
rs9538925	0.92[EUR][1000 genomes]
rs9538937	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817223	chr13:60623429-61453435	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv900241	chr13:61217896-61368021	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832623	chr13:61303818-61468576	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1037954	chr13:61319533-61395907	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61314600-61327800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:61322400-61328400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:61323800-61324800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:61323800-61326000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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