Variant report
| Variant | rs17058733 |
|---|---|
| Chromosome Location | chr13:61307277-61307278 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TDRD3-7 | chr13:61304310-61307732 | NONHSAT034116 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10507656 | 0.98[EUR][1000 genomes] |
| rs12861751 | 0.92[EUR][1000 genomes] |
| rs12875061 | 0.92[EUR][1000 genomes] |
| rs1514165 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1548176 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1572023 | 0.90[EUR][1000 genomes] |
| rs17058789 | 0.92[EUR][1000 genomes] |
| rs17331929 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2175869 | 0.90[EUR][1000 genomes] |
| rs3127034 | 0.90[EUR][1000 genomes] |
| rs35252142 | 0.92[EUR][1000 genomes] |
| rs71434967 | 0.90[EUR][1000 genomes] |
| rs7317718 | 0.90[EUR][1000 genomes] |
| rs7338113 | 0.90[EUR][1000 genomes] |
| rs7982093 | 0.90[EUR][1000 genomes] |
| rs7985854 | 0.90[EUR][1000 genomes] |
| rs884318 | 0.92[EUR][1000 genomes] |
| rs884319 | 0.92[EUR][1000 genomes] |
| rs9528209 | 0.92[EUR][1000 genomes] |
| rs9528210 | 0.90[EUR][1000 genomes] |
| rs9538891 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9538901 | 0.92[EUR][1000 genomes] |
| rs9538907 | 0.90[EUR][1000 genomes] |
| rs9538920 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9538923 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9538925 | 0.88[EUR][1000 genomes] |
| rs9538937 | 0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817223 | chr13:60623429-61453435 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv900241 | chr13:61217896-61368021 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv832623 | chr13:61303818-61468576 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
