Variant report
| Variant | rs884318 |
|---|---|
| Chromosome Location | chr13:61321684-61321685 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10507656 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12861751 | 1.00[EUR][1000 genomes] |
| rs12875061 | 1.00[EUR][1000 genomes] |
| rs1514165 | 0.92[EUR][1000 genomes] |
| rs1548176 | 0.94[EUR][1000 genomes] |
| rs1572023 | 0.94[EUR][1000 genomes] |
| rs17058733 | 0.92[EUR][1000 genomes] |
| rs17058789 | 1.00[EUR][1000 genomes] |
| rs17331929 | 0.92[EUR][1000 genomes] |
| rs2175869 | 0.94[EUR][1000 genomes] |
| rs3127034 | 0.94[EUR][1000 genomes] |
| rs35252142 | 1.00[EUR][1000 genomes] |
| rs71434967 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7317718 | 0.94[EUR][1000 genomes] |
| rs7338113 | 0.94[EUR][1000 genomes] |
| rs7982093 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7985854 | 0.94[EUR][1000 genomes] |
| rs884319 | 1.00[EUR][1000 genomes] |
| rs9528209 | 1.00[EUR][1000 genomes] |
| rs9528210 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9538891 | 0.88[EUR][1000 genomes] |
| rs9538901 | 1.00[EUR][1000 genomes] |
| rs9538907 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9538920 | 0.94[EUR][1000 genomes] |
| rs9538923 | 0.96[EUR][1000 genomes] |
| rs9538925 | 0.92[EUR][1000 genomes] |
| rs9538937 | 0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817223 | chr13:60623429-61453435 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv900241 | chr13:61217896-61368021 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv832623 | chr13:61303818-61468576 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1037954 | chr13:61319533-61395907 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:61314600-61327800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr13:61321600-61322200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
