Variant report

Variant	rs1588696
Chromosome Location	chr13:37775909-37775910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11147640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1932811	0.89[AMR][1000 genomes]
rs4054542	1.00[AMR][1000 genomes]
rs4384486	1.00[AMR][1000 genomes]
rs7336363	1.00[AMR][1000 genomes]
rs9547737	0.89[AMR][1000 genomes]
rs9547745	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37773200-37783600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:37773400-37776400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr13:37775200-37776000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr13:37775200-37776800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr13:37775400-37776000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr13:37775400-37776000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr13:37775400-37776000	Enhancers	NHLF	lung
8	chr13:37775400-37776200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr13:37775400-37776800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr13:37775400-37776800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr13:37775400-37777000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr13:37775400-37777400	Enhancers	NHDF-Ad	bronchial
13	chr13:37775600-37776000	Enhancers	Adipose Nuclei	Adipose
14	chr13:37775800-37776200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr13:37775800-37777000	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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