Variant report

Variant	rs1932811
Chromosome Location	chr13:37751622-37751623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11147640	0.89[AMR][1000 genomes]
rs1588696	0.89[AMR][1000 genomes]
rs17054900	1.00[CEU][hapmap]
rs4054542	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4384486	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7336363	1.00[CEU][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes]
rs9547737	0.81[AFR][1000 genomes]
rs9547745	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37747400-37752400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:37747600-37752400	Enhancers	Fetal Lung	lung
3	chr13:37749400-37751800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr13:37750000-37752200	Enhancers	Colon Smooth Muscle	Colon
5	chr13:37751000-37752000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr13:37751000-37752000	Weak transcription	NHLF	lung
7	chr13:37751400-37752000	Weak transcription	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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