Variant report

Variant	rs4054542
Chromosome Location	chr13:37746462-37746463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11147640	1.00[AMR][1000 genomes]
rs1588696	1.00[AMR][1000 genomes]
rs1932811	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4384486	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7336363	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547737	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9547745	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37739800-37747400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:37744200-37747200	Weak transcription	NHLF	lung
3	chr13:37744200-37747600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:37744400-37747200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr13:37744600-37746800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:37744600-37747200	Weak transcription	Osteobl	bone
7	chr13:37745000-37747000	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr13:37746200-37746600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:37746200-37746800	Active TSS	Brain Angular Gyrus	brain
10	chr13:37746200-37746800	Active TSS	Brain Substantia Nigra	brain
11	chr13:37746200-37748200	Enhancers	Fetal Muscle Leg	muscle
12	chr13:37746400-37746600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr13:37746400-37746600	Active TSS	Brain Cingulate Gyrus	brain
14	chr13:37746400-37746800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr13:37746400-37746800	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr13:37746400-37747200	Weak transcription	NHDF-Ad	bronchial
17	chr13:37746400-37747600	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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