Variant report

Variant	rs159023
Chromosome Location	chr5:94288000-94288001
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs152279	0.85[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs159011	0.85[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs159012	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs159016	0.81[ASN][1000 genomes]
rs168708	0.82[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs17084334	0.81[CEU][hapmap];0.82[AMR][1000 genomes]
rs293041	0.83[ASN][1000 genomes]
rs293042	0.83[ASN][1000 genomes]
rs293043	0.85[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs293045	0.85[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs32918	0.85[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs32919	0.85[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs32920	0.85[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs456156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs463416	0.81[ASN][1000 genomes]
rs464308	0.85[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs464450	0.83[ASN][1000 genomes]
rs465671	0.85[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs465714	0.85[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs467322	0.83[ASN][1000 genomes]
rs816871	0.85[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs159023	MCTP1	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94272800-94290800	Weak transcription	Lung	lung
2	chr5:94274200-94289800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:94275400-94290600	Weak transcription	Dnd41	blood
4	chr5:94275800-94288000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:94275800-94288000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:94278000-94288600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:94278000-94290600	Weak transcription	GM12878-XiMat	blood
8	chr5:94282000-94289000	Weak transcription	Adipose Nuclei	Adipose
9	chr5:94282600-94288000	Weak transcription	Primary T cells from cord blood	blood
10	chr5:94285800-94289600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr5:94286000-94289000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr5:94286200-94289200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr5:94287200-94289000	Strong transcription	HUVEC	blood vessel
14	chr5:94287400-94288200	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr5:94287400-94289000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:94288000-94288400	Strong transcription	Primary T cells from cord blood	blood
17	chr5:94288000-94288600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:94288000-94289000	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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