Variant report

Variant	rs293042
Chromosome Location	chr5:94290541-94290542
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs152279	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs159011	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159012	0.89[ASN][1000 genomes]
rs159016	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs159019	0.88[EUR][1000 genomes]
rs159021	0.88[EUR][1000 genomes]
rs159023	0.83[ASN][1000 genomes]
rs168708	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084352	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs293041	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs293043	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs293045	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs32918	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs32919	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs32920	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs456156	0.89[ASN][1000 genomes]
rs463416	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs464308	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs464450	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs465671	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs465714	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs467322	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72777354	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs816871	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs816873	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405239	chr5:94288771-94290944	Strong transcription ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94272800-94290800	Weak transcription	Lung	lung
2	chr5:94275400-94290600	Weak transcription	Dnd41	blood
3	chr5:94278000-94290600	Weak transcription	GM12878-XiMat	blood
4	chr5:94288200-94294600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr5:94288400-94291400	Weak transcription	Primary T cells from cord blood	blood
6	chr5:94288600-94296600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:94289000-94290800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr5:94289000-94290800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr5:94289000-94291000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr5:94289000-94304800	Weak transcription	HUVEC	blood vessel
11	chr5:94289200-94300800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr5:94290200-94292200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links